Serwisy do modelowania struktury i funkcji makrocząsteczek

Samodzielne serwisy:

• QA-RecombineIt: a server for quality assessment and recombination of protein models

  http://genesilico.pl/qarecombineit

• Metapredictor of protein-RNA interactions (integrated with GeneSilico metaserver)

  http://iimcb.genesilico.pl/meta2/

• MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins

  http://genesilico.pl/metadisorder/

• AmIGoMR: a server for testing the utility of comparative models and their local quality for protein crystal structure determination by Molecular Replacement

  http://iimcb.genesilico.pl/pawlo/amigomr

• LigandRNA: computational predictor of RNA-ligand interactions

  http://ligandrna.genesilico.pl/

• MetalionRNA: computational predictor of metal-binding sites in RNA structures

  http://metalionrna.genesilico.pl/

• RNPDock/NPDock

  http://genesilico.pl/NPDock

• ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes

  http://iimcb.genesilico.pl/clarna/

• Brickworx: a server for building recurrent RNA and DNA structural motifs into medium and low-resolution electron density maps

  http://iimcb.genesilico.pl/brickworx

Samodzielne programy do pobrania online:

• SimRNA – a tool for simulations of RNA conformational dynamics, including RNA 3D structure prediction

  http://genesilico.pl/software/stand-alone/simrna

• RNAmap2D – calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures

  http://genesilico.pl/software/stand-alone/rnamap2d

• DARS-RNP/QUASI-RNP potentials for protein-RNA docking

  http://www.genesilico.pl/RNP

• Brickworx: a standalone method for building recurrent RNA and DNA structural motifs into medium and low-resolution electron density maps

  http://iimcb.genesilico.pl/brickworx/download/

Samodzielne bazy danych:

• RNApathwaysDB – a database of RNA maturation and decay pathways

  http://www.genesilico.pl/rnapathwaysdb/

• MODOMICS: a database of RNA modification pathways: 2012 update

  http://modomics.genesilico.pl/