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ClustSense
ClustSense : web-service for simulations and analysis of (oncogenic) signalling pathways. Functionalities: Numerical simulations and visualisation (including interactive plots) Sensitivity analysis Parameters clustering and identifiability analysis. Main Workflow Architecture Methods Exemplary use.. read more »
DiSCuS
DiSCuS – Database System for Compound Selection. The primary goal of DiSCuS is to aid researchers in the steps subsequent to generating high-throughput virtual screening (HTVS) results, such as selection of compounds for further study, purchase, or synthesis. To do so, DiSCuS provides: a storage facility for ligand–receptor complexes (generated with external programs), a number of tools for validating these complexes, such as scoring functions, potential energy contributions, and med-chem.. read more »
Nencki Genomics Database
Nencki Genomics Database (NGD) contains data on regulatory regions on the scale of the whole genomes of human, mouse and rat. Our database is the first regulatory regions database for the rat. NGD is based on the reference Ensembl funcgen database, the content and functionality of which it extends with: ability to add users’ data, with access control of the added data by the users; results of motif finding for known transcription factor binding motifs (Jaspar, Transfac Professional) on the.. read more »
Nencki Genomics Portal
Nencki Genomics Portal (NGP) is a group of functionally related network tools (webservices) and databases, for analysis of transcriptional regulation. Functionality of the portal is accessible from the web browser, through our Galaxy server. Activities available through the portal are grouped into 4 inter-related groups: analysis of genomes; analysis of expression; analysis of regulation; analysis of function. Within each group, multiple activities are available, e.g. for the analysis of.. read more »
TavOPS
The Taverna services for Systems Biology (tav4sb) project provides a set of new Web service operations, which extend the functionality of the Taverna Workbench in a domain of systems biology. The Taverna Workbench is a tool which facilitates the design and execution of in silico experiments. The experiments are constructed as workflows which can be stored and executed when needed. The building blocks of a workflow are services, also known as processors. Technically, workflow is a set of.. read more »